Overview
Mycobacterium are slender, aerobic, non-motile rods with a waxy, mycolic-acid-rich cell wall that makes them resistant to decolourisation by dilute mineral acids after staining β hence the name 'acid-fast bacilli'. The genus includes Mycobacterium tuberculosis (Koch's bacillus, 1882) and Mycobacterium leprae (Hansen's bacillus, 1868), the causative agents of tuberculosis and leprosy respectively.
This lesson covers the morphology, culture characteristics, biochemical differentiation, pathogenesis, and comprehensive laboratory diagnosis of both organisms, including sputum microscopy, culture, sensitivity testing, and the Mantoux and Lepromin skin tests.
Learning Objectives
After this lesson you will be able toβ¦- Describe the morphology of Mycobacterium tuberculosis and M. leprae.
- Describe the cultural and biochemical characteristics of M. tuberculosis and M. leprae.
- Explain the pathogenesis of tuberculosis and leprosy.
- Explain the laboratory diagnosis of M. tuberculosis and M. leprae, including the Mantoux and Lepromin tests.
Clinical Story
Why This MattersA 45-year-old man presents with a persistent cough of 4 weeks' duration, evening fever, night sweats and unintentional weight loss. The physician requests sputum for AFB smear and culture. The technologist prepares a Ziehl-Neelsen stain, carefully heat-fixes the smear, and searches at least 300 oil-immersion fields before confidently reporting the presence β or absence β of acid-fast bacilli, a result that will determine whether this patient starts anti-tubercular therapy and whether his household needs screening.
Core Concepts
M. tuberculosis is a straight or slightly curved rod, about 3 Γ 0.3 Β΅m, occurring singly, in pairs or small clumps; M. bovis is straighter, shorter and stouter. Though described as Gram-positive, tubercle bacilli resist decolourisation by carbol fuchsin with 20% sulphuric acid and alcohol (Ziehl-Neelsen method) due to the unsaponifiable wax (mycolic acid) forming a semipermeable membrane that makes the cell acid-fast.
Generation time in vitro is 14β15 hours; optimum temperature 37Β°C (no growth below 25Β°C or above 40Β°C); optimum pH 6.4β7.0. M. tuberculosis is an obligate aerobe growing luxuriantly, while M. bovis is microaerophilic on primary isolation and grows sparsely. On solid media, M. tuberculosis forms dry, rough, raised, wrinkled, creamy-white colonies becoming yellowish on further incubation; M. bovis forms flat, smooth, moist, white colonies that break up easily.
Key differentiating tests include the niacin test (positive in human type M. tuberculosis, negative in bovine type β canary yellow colour with cyanogen bromide/aniline), aryl sulphatase test (positive only in atypical mycobacteria), neutral red test (binds neutral red in virulent strains), catalase-peroxidase test (tubercle bacilli weakly catalase-positive but peroxidase-positive, unlike most atypical mycobacteria), and nitrate reduction (positive in M. tuberculosis, negative in M. bovis).
Infection spreads by inhalation of aerosolised droplet nuclei from an open pulmonary case β one open case may infect 25 contacts, with coughing releasing up to 3000 infectious nuclei. Alveolar macrophages ingest bacilli; cell-mediated immunity via activated CD4+ Th-1 cells (interferon-Ξ³, interleukins) contains infection, while Th-2 cytokines drive delayed-type hypersensitivity and tissue destruction. The characteristic lesion is the tubercle β an avascular granuloma with central giant cells (Β± caseation) and a peripheral zone of lymphocytes and fibroblasts. Primary tuberculosis forms the Ghon focus plus hilar lymphadenopathy (primary complex); post-primary (reactivation) disease affects the upper lobes with cavitation.
Sputum microscopy by Ziehl-Neelsen staining is the most reliable single method β at least 300 oil-immersion fields must be examined before a negative report, and β₯2 typical bacilli are needed for a positive report; results are graded 1+ to 4+ by bacilli count per field. Petroff's concentration method (4% NaOH digestion and centrifugation) increases yield. Culture on LΓΆwenstein-Jensen (LJ) medium detects as few as 10β100 bacilli/mL but needs 8β12 weeks incubation before a negative report. The Mantoux test injects 0.1 mL PPD (5 TU) intradermally; induration β₯10 mm at 48β72 hrs is positive, indicating past or present infection or BCG vaccination.
M. leprae is a straight/curved rod, 1β8 Γ 0.2β0.5 Β΅m, Gram-positive and more readily stained than the tubercle bacillus, but less strongly acid-fast (5% sulphuric acid used for decolourisation instead of 20%). Bacilli occur singly, in groups, and as lipid-bound agglomerates called 'globi'. Leprosy is a chronic granulomatous disease with four clinical types: lepromatous (low host resistance, multibacillary, lepromin-negative, most infective), tuberculoid (high resistance, paucibacillary, lepromin-positive), borderline/dimorphous, and indeterminate. Diagnosis relies on slit-skin smears (Ziehl-Neelsen with 5% acid) from nasal mucosa, skin lesions and ear lobules, with the Bacteriological Index (BI) calculated from graded smears, and the Lepromin (Mitsuda) test used for classification and prognosis, not diagnosis.
Laboratory Principle
Acid-fastness is the central diagnostic principle for Mycobacterium: the cell wall's high mycolic acid (lipid) content forms a waxy barrier that, once penetrated by carbol fuchsin under heat, resists decolourisation by strong mineral acid-alcohol β a property no other common bacterial genus shares to the same degree. This selective retention of dye, visualised as bright red rods against a blue/green counterstained background in the Ziehl-Neelsen technique, both identifies the organism as mycobacterial and β combined with niacin, catalase-peroxidase and growth rate characteristics β allows species-level differentiation between M. tuberculosis, M. bovis, and atypical mycobacteria.
Equipment Required
Reagents & Materials
| Reagent / Material | Concentration / Grade | Purpose | Storage |
|---|---|---|---|
| Carbol Fuchsin | Strong stain for ZN technique | Primary acid-fast stain | Room temperature, dark bottle |
| 20% Sulphuric Acid | Decolouriser | Acid-fast decolourisation (M. tuberculosis) | Room temperature, corrosive β handle with care |
| 5% Sulphuric Acid | Weaker decolouriser | Decolourisation for M. leprae smears | Room temperature, corrosive |
| Loeffler's Methylene Blue | Counterstain, 1% | Counterstaining ZN smears | Room temperature |
| LΓΆwenstein-Jensen (LJ) Medium | Egg-based selective medium | Culture of M. tuberculosis | 2β8Β°C, protect from light |
| Purified Protein Derivative (PPD) | 5 TU/0.1 mL | Mantoux tuberculin skin test | 2β8Β°C, protect from light |
Step-by-Step Procedure
Collect early morning sputum before any meal; if scanty, collect a 24-hour sample; sample on three separate days to increase detection rate.
Prepare smear from the thick purulent part of sputum, heat-fix, and stain by the Ziehl-Neelsen technique β carbol fuchsin with heat, decolourise with 20% sulphuric acid/alcohol, counterstain with methylene blue.
Examine under oil immersion for bright red acid-fast bacilli against a blue background; examine at least 300 fields before a negative report; grade positive smears 1+ to 4+.
Use Petroff's method β digest sputum with equal volume 4% NaOH at 37Β°C, centrifuge, neutralise sediment, and use for smear, culture and animal inoculation.
Inoculate at least two LJ bottles, incubate at 37Β°C, examine after 4 days then at least twice weekly; declare negative only after 8β12 weeks.
For TB, inject 0.1 mL PPD (5 TU) intradermally and read induration at 48β72 hrs; for leprosy, prepare slit-skin smears from nasal mucosa, skin lesions and ear lobules and stain with 5% acid ZN technique.
Flow Diagram
Quality Control
Include a known AFB-positive smear and an AFB-negative smear as controls with every staining batch. Use H37Rv (M. tuberculosis reference strain) and a known atypical mycobacterium as positive/negative controls for niacin and aryl sulphatase testing, and verify LJ medium sterility with each new batch before inoculation.
Participate in national/WHO-affiliated External Quality Assessment Schemes (EQAS) for AFB smear microscopy and culture, including blinded slide panels, to maintain accreditation for tuberculosis diagnostic laboratories under national TB control programmes.
Reference Values
Key Diagnostic Parametersβ οΈ Reference ranges may vary between laboratories. Always apply your laboratory's established reference intervals.
Clinical Interpretation
| Finding | Possible Significance | Action / Follow-up |
|---|---|---|
| AFB smear positive, β₯10 bacilli per field (4+) | Highly infectious, heavy bacillary load pulmonary TB | Start anti-tubercular therapy; isolate; notify per national TB programme |
| Niacin positive, nitrate reduction positive | Confirms M. tuberculosis (human type) | Report as M. tuberculosis; proceed to drug sensitivity testing |
| Niacin negative, nitrate reduction negative, microaerophilic growth | Suggestive of M. bovis (bovine type) | Report as M. bovis; consider zoonotic exposure history |
| Mantoux induration β₯10 mm | Positive β past/present TB infection or BCG vaccination | Correlate with clinical and radiological findings |
| Lepromin test positive | Tuberculoid leprosy β good cell-mediated immunity and prognosis | Supports paucibacillary classification; guides multidrug therapy regimen |
Common Errors & How to Avoid Them
Cause: Stopping examination before 300 fields, or reporting negative after too few fields, misses low bacillary load cases.
Prevention: Always examine a minimum of 300 oil-immersion fields (about 10 minutes) before issuing a negative report, per standard protocol.
Cause: Reusing slides or improper cleaning can transfer AFB from a positive to a negative sample, causing false positives.
Prevention: Always use new, individually labelled slides for each specimen and never reuse slides for AFB smears.
Cause: Declaring a culture negative before the full 8β12 week incubation period misses slow-growing strains.
Prevention: Always incubate LJ cultures for the complete recommended period, checking growth at 4 days and then at least twice weekly, before finalising a negative report.
Laboratory Tips from the Bench
When grading AFB smears, remember the inverse relationship between fields examined and bacilli count β 1β9 bacilli per 100 fields is scored 1+, while 10 or more bacilli per single field is scored 4+; always follow the standard grading table exactly.
For suspected leprosy, always sample multiple sites (at least four skin lesions, a nasal swab, and both ear lobes) since bacillary load varies greatly by site, and calculate the Bacteriological Index (BI) from the combined smears.
Remember 'RIPE' is not directly related to ZN staining, but for acid-fastness recall: 'Wax Won't Wash' β the mycolic acid wax coat is why acid-alcohol cannot wash out the carbol fuchsin stain.
Important Notes
All sputum handling and AFB smear preparation for suspected tuberculosis must be performed in a certified biosafety cabinet, as M. tuberculosis is highly transmissible via aerosolised droplet nuclei.
The Lepromin test does not diagnose leprosy and does not indicate prior contact with M. leprae β it is used only to classify existing disease, assess prognosis, and select lepromin-positive individuals for leprosarium work.
Interactive Quiz
Test Your KnowledgeFlashcards
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Clinical Case Study
Apply Your Knowledge4-week history of productive cough, low-grade evening fever, drenching night sweats, and unintentional weight loss of 5 kg. No prior TB treatment history.
The heavily positive (4+) AFB smear, upper lobe cavitation on X-ray, and niacin-positive, nitrate-positive culture together confirm active pulmonary tuberculosis caused by Mycobacterium tuberculosis (human type), consistent with post-primary reactivation disease.
- βA 4+ smear grade indicates high infectivity β the patient requires immediate isolation and notification.
- βNiacin and nitrate reduction tests distinguish M. tuberculosis from M. bovis.
- βUpper lobe cavitation is characteristic of post-primary (reactivation) tuberculosis.
Frequently Asked Questions
Because a minimum bacillary concentration (about 10,000 bacilli/mL of sputum) is needed for reliable direct smear detection, thorough examination across 300 fields is required to avoid missing low bacillary load, paucibacillary cases.
The Mantoux test uses PPD to detect delayed hypersensitivity to M. tuberculosis and can indicate infection or BCG vaccination, whereas the Lepromin test uses lepromin antigen and is used only to classify existing leprosy and assess prognosis, not to diagnose leprosy.
Mycobacteria are extremely slow-growing (generation time 14β15 hours compared to 20 minutes for many bacteria), so cultures must be observed for 8β12 weeks before a true negative can be confidently declared.
Quick Revision
10-Minute ReviewKey Takeaways
- Acid-fastness, conferred by mycolic acid, is the defining laboratory characteristic of the Mycobacterium genus.
- Sputum smear microscopy remains the most reliable single method for diagnosing pulmonary tuberculosis.
- Niacin, catalase-peroxidase and nitrate reduction tests differentiate M. tuberculosis from M. bovis and atypical mycobacteria.
- Leprosy exists across a spectrum from tuberculoid (paucibacillary) to lepromatous (multibacillary) disease.
- The Mantoux test detects infection/exposure, while the Lepromin test only classifies existing leprosy.
Competency Checklist
Track Your MasteryReferences
- National Institute of Open Schooling. Microbiology β Lesson 20: Mycobacterium.
- Ananthanarayan R, Paniker CKJ. Textbook of Microbiology. Universities Press.
- World Health Organization. Global Tuberculosis Report; WHO Leprosy Guidelines.