Microbiology
Lesson 17 of 65

Enterococcus

Medium ⏱ 12 min read πŸ“š 25 min study πŸ—“ Updated Jul 2026 πŸ“‹ Prereq: Lesson 16: Pneumococcus
Course Progress 0%
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Overview

Enterococcus is a genus of lactic acid bacteria comprising catalase-negative, Gram-positive cocci that often occur in pairs or short chains. They are part of the normal enteric flora but have become one of the most important causes of nosocomial infection worldwide because of their remarkable antibiotic resistance.

Two species dominate clinical practice β€” E. faecalis (90–95% of infections) and E. faecium (5–10%, but increasingly antibiotic-resistant). This lesson covers their identification, differentiation from streptococci, and the growing problem of vancomycin resistance.

Subject
Microbiology
Difficulty
Medium
Read Time
12 min
Study Time
25 min
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Learning Objectives

After this lesson you will be able to…
βœ… By the end of this lesson
  • Describe the general characteristics of Enterococcus.
  • Identify Enterococci in the laboratory using biochemical tests.
  • Explain the pathogenesis of enterococcal infection.
  • Discuss intrinsic and acquired antibiotic resistance in Enterococcus, including vancomycin resistance.
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Clinical Story

Why This Matters
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A Patient Walks Into the Lab…

An elderly patient in the intensive care unit develops a catheter-associated urinary tract infection that fails to respond to first-line cephalosporins. The microbiology lab isolates a catalase-negative, Gram-positive coccus that grows in 6.5% NaCl and hydrolyses bile-aesculin β€” raising immediate suspicion of Enterococcus and the need to test for vancomycin resistance before treatment can proceed.

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Core Concepts

Enterococci are facultative anaerobes capable of respiration in both oxygen-rich and oxygen-poor environments. Although they do not form spores, they tolerate a remarkably wide range of conditions: temperature 10–45Β°C, pH 4.5–10.0, and high sodium chloride concentrations. They are normal inhabitants of the gastrointestinal flora and were previously classified as Group D streptococci.

Enterococci are Gram-positive cocci occurring singly, in pairs, and short chains; cells may appear coccobacillary from agar growth but more oval and chain-like from thioglycolate broth. They can exhibit beta or gamma haemolysis (occasionally alpha) on sheep blood agar and grow optimally at 35Β°C, over a much wider temperature range (10–45Β°C) than streptococci.

Because the group D antigen is a teichoic acid and not a good serological marker, Enterococci are identified by phenotype: growth in broth with 6.5% NaCl, hydrolysis of aesculin in the presence of 40% bile salts (bile-aesculin medium), hydrolysis of pyrrolidonyl-Ξ²-naphthylamide (PYR positive, except E. cecorum, E. columbae, E. saccharolyticus), and production of leucine aminopeptidase (LAP positive in most strains).

Once confirmed as Enterococcus, species are divided into 5 groups based on acid formation in mannitol, sorbitol and sorbose broths and arginine hydrolysis. Pigmentation testing (yellow pigment) identifies E. casseliflavus, E. mundtii and related species. Pyruvate utilisation differentiates E. faecalis from E. faecium, while the tellurite tolerance test also separates these two clinically important species.

Enterococci are intrinsically resistant to cephalosporins, penicillinase-resistant penicillins, and monobactams, with low-level intrinsic resistance to aminoglycosides and intermediate-to-resistant susceptibility to fluoroquinolones. They are inhibited but not killed by beta-lactams such as ampicillin. Vancomycin, the primary alternative therapy, is increasingly compromised by Vancomycin-Resistant Enterococci (VRE), most common in E. faecium but also seen in E. faecalis.

Enterococci are among the most frequent causes of nosocomial infection, especially in intensive care units, selected for by cephalosporin therapy to which they are intrinsically resistant. They are transmitted primarily via the hands of hospital personnel and occasionally via medical devices. Common infection sites include the urinary tract, wounds, biliary tract, and blood; they may cause neonatal meningitis/bacteraemia and adult endocarditis.

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Laboratory Principle

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The Science Behind This Test

Presumptive identification of Enterococcus exploits its unusual physiological hardiness relative to other streptococci: it can hydrolyse aesculin to aesculetin in the presence of 40% bile (a concentration that inhibits most other Gram-positive cocci), and it can grow in hypertonic 6.5% NaCl broth and at temperatures up to 45Β°C β€” conditions that streptococci cannot tolerate. Combined with a positive PYR and LAP enzymatic test, this phenotypic fingerprint reliably distinguishes Enterococcus from Streptococcus without relying on the poorly antigenic group D teichoic acid.

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Equipment Required

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Incubator (35Β°C)
Ambient air, non-COβ‚‚ required
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Water Bath
45Β°C tolerance testing
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Autoclave
Sterilising bile-aesculin & NaCl broth
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Compound Microscope
Gram stain examination
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Inoculating Loops
Sterile, disposable or flame-sterilised
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Anaerobic Jar (optional)
For facultative anaerobic incubation checks
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Reagents & Materials

Reagent / MaterialConcentration / GradePurposeStorage
Bile-Aesculin Agar40% bile salts, aesculinDetects aesculin hydrolysis (blackening)2–8Β°C
6.5% NaCl Broth6.5% sodium chlorideTests salt tolerance of EnterococcusRoom temperature
PYR Reagent/DiscL-pyrrolidonyl-Ξ²-naphthylamidePYR hydrolysis test2–8Β°C, protect from light
LAP DiscLeucine-Ξ²-naphthylamideLeucine aminopeptidase test2–8Β°C
Sheep Blood Agar5% sheep bloodHaemolysis pattern & primary culture2–8Β°C
Hydrogen Peroxide (3%)Catalase reagentConfirms catalase-negative reactionRoom temperature, dark bottle
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Step-by-Step Procedure

1
Gram stain the isolate

Prepare a smear from the colony/broth and Gram stain to confirm Gram-positive cocci in pairs and short chains.

2
Perform catalase test

Add a colony to 3% hydrogen peroxide on a slide; absence of bubbling confirms catalase-negative status, consistent with Enterococcus.

3
Test bile-aesculin hydrolysis

Streak onto bile-aesculin agar; blackening of the medium within 24–48 hours indicates aesculin hydrolysis in the presence of bile.

4
Test salt tolerance

Inoculate 6.5% NaCl broth; turbidity after incubation at 35Β°C confirms growth in hypertonic conditions.

5
Perform PYR and LAP tests

Apply the isolate to PYR and LAP discs/reagents; a positive (red/orange) colour reaction within 5 minutes supports Enterococcus identification.

6
Species-level differentiation

Perform mannitol, sorbitol, sorbose, arginine hydrolysis, pigmentation, pyruvate utilisation, and tellurite tolerance tests to differentiate E. faecalis from E. faecium and other species.

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Flow Diagram

Catalase-negative Gram +ve Cocci
Bile-Aesculin Hydrolysis Positive
Growth in 6.5% NaCl + 45Β°C
PYR & LAP Positive
Species ID (Mannitol/Sorbose/Arginine)
βœ“ Report: Enterococcus species + VRE status
βœ…

Quality Control

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Internal Quality Control

Include a known Enterococcus faecalis (ATCC 29212) and a Streptococcus species (bile-aesculin negative, salt-intolerant) as positive and negative controls with every batch of bile-aesculin agar and 6.5% NaCl broth. Run vancomycin susceptibility controls (VRE and vancomycin-sensitive strains) whenever new antibiotic discs are introduced.

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External Quality Assessment

Enrol in a national or regional EQAS programme for antimicrobial susceptibility testing, specifically covering vancomycin resistance detection in Enterococcus, given its major infection-control significance in hospital settings.

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Reference Values

Key Diagnostic Parameters
Optimum Growth Temperature
35 (range 10–45)
Β°C
NaCl Tolerance
6.5
% w/v
Bile Concentration for Aesculin Test
40
%
E. faecalis share of infections
85–90
%
E. faecium share of infections
5–10
%

⚠️ Reference ranges may vary between laboratories. Always apply your laboratory's established reference intervals.

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Clinical Interpretation

FindingPossible SignificanceAction / Follow-up
Catalase-negative, bile-aesculin positive, grows in 6.5% NaClConfirms genus EnterococcusProceed to species identification and susceptibility testing
Vancomycin-resistant Enterococcus (VRE)Serious nosocomial pathogen, especially in E. faeciumContact/infection control precautions; alternate antibiotics (e.g. linezolid)
Enterococcus isolated from blood in patient with heart murmurPossible infective endocarditisBlood cultures, echocardiography, combination antibiotic therapy
Enterococcus in mixed urine culture, low colony countPossible contamination/colonisation rather than true infectionCorrelate with symptoms and repeat culture if needed
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Common Errors & How to Avoid Them

⚠️ Error: Confusing Enterococcus with Group D Streptococcus serologically

Cause: Relying on group D antigen agglutination, which is a poor teichoic-acid-based marker, gives unreliable identification.
Prevention: Use phenotypic tests β€” bile-aesculin, 6.5% NaCl, PYR, LAP β€” instead of serogrouping for definitive identification.

⚠️ Error: Missing low-level aminoglycoside resistance

Cause: Standard susceptibility panels may not flag intrinsic low-level aminoglycoside resistance, leading to inappropriate monotherapy.
Prevention: Perform high-level aminoglycoside resistance screening before considering synergistic combination therapy for serious infections such as endocarditis.

⚠️ Error: Under-reporting VRE due to inadequate incubation

Cause: Vancomycin resistance can be subtle and take longer to express phenotypically on standard susceptibility testing.
Prevention: Follow full recommended incubation times and use validated VRE screening media (e.g. vancomycin-containing selective agar) when infection control is a concern.

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Laboratory Tips from the Bench

πŸ’‘ Pro Tip

A quick bedside differentiator: Enterococcus grows readily at 45Β°C and in 6.5% NaCl broth, conditions that inhibit virtually all streptococci β€” use this simple physiological test when serology is ambiguous.

πŸ’‘ Pro Tip

Always test for high-level aminoglycoside resistance before recommending synergistic penicillin-aminoglycoside combination therapy for enterococcal endocarditis, as intrinsic low-level resistance can mask true synergy failure.

🧠 Memory Tip

Remember 'BEST' for Enterococcus ID: Bile-aesculin positive, 6.5% NaCl growth, Salt/temperature tolerant, Tests PYR/LAP positive.

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Important Notes

⚠️
Rising VRE Threat

Vancomycin-resistant Enterococcus faecium is a WHO priority pathogen. Strict infection control β€” hand hygiene, contact precautions, and environmental cleaning β€” is essential to prevent hospital-wide spread.

ℹ️
Beta-lactam Tolerance

Even when susceptible in vitro, enterococci are typically only inhibited (bacteriostatic effect), not killed, by beta-lactams alone β€” hence combination therapy with an aminoglycoside is often needed for bactericidal effect in serious infections.

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Interactive Quiz

Test Your Knowledge
Lesson Quiz
5 Questions⏱ ~5 min
Multiple Choice β€” Question 1 of 5
Which biochemical characteristic best distinguishes Enterococcus from Streptococcus?
True or False β€” Question 2 of 5
Enterococcus faecium is generally more antibiotic-resistant than Enterococcus faecalis.
Fill in the Blank β€” Question 3 of 5
Complete: The optimum growth temperature for Enterococcus is ___ Β°C.
Match the Following β€” Question 4 of 5
Match each item on the left with its correct pair on the right.
Column A
PYR test
Bile-aesculin
6.5% NaCl broth
Tellurite tolerance
Column B
Salt tolerance
Pyrrolidonyl arylamidase
Differentiates E. faecalis/faecium
Aesculin hydrolysis in bile
Case-Based Question β€” Question 5 of 5
Case: A hospitalised patient with an indwelling urinary catheter develops fever and a UTI that fails cephalosporin therapy. Urine culture grows catalase-negative, Gram-positive cocci that hydrolyse bile-aesculin and grow in 6.5% NaCl.
Why did cephalosporin therapy fail?
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Flashcards

Tap to flip

Click or tap any card to reveal the answer. Use arrow keys to navigate in single-card mode.

Term
Enterococcus Gram reaction & catalase
πŸ‘† Tap to reveal
Answer
Gram-positive cocci, catalase-negative
πŸ‘† Tap to flip back
Term
Bile-aesculin test
πŸ‘† Tap to reveal
Answer
Positive: blackening of medium due to aesculin hydrolysis in 40% bile
πŸ‘† Tap to flip back
Term
Salt tolerance test
πŸ‘† Tap to reveal
Answer
Growth in broth containing 6.5% NaCl
πŸ‘† Tap to flip back
Term
Most common Enterococcus species clinically
πŸ‘† Tap to reveal
Answer
E. faecalis (85–90% of infections)
πŸ‘† Tap to flip back
Term
VRE
πŸ‘† Tap to reveal
Answer
Vancomycin-Resistant Enterococcus, most common in E. faecium
πŸ‘† Tap to flip back
Term
Common route of nosocomial transmission
πŸ‘† Tap to reveal
Answer
Contaminated hands of hospital personnel
πŸ‘† Tap to flip back
πŸ“‹

Clinical Case Study

Apply Your Knowledge
πŸ‘€
Mrs. Lalitha Nair
72 years old Β· Female Β· ICU patient, indwelling urinary catheter

Develops fever (38.6Β°C) and cloudy, foul-smelling urine 5 days after catheter placement. No response to empiric cephalosporin therapy after 48 hours.

Urine Culture
Catalase-negative Gram +ve cocci
Bile-Aesculin Test
Positive (blackened medium)
6.5% NaCl Broth
Growth present
Vancomycin Susceptibility
Resistant (VRE)

The catalase-negative, bile-aesculin positive, salt-tolerant coccus confirms Enterococcus, and vancomycin resistance identifies this as VRE β€” explaining both the catheter-associated UTI and the failure of standard cephalosporin therapy, to which Enterococcus is intrinsically resistant.

Catheter-Associated VRE Urinary Tract Infection
  • β†’Enterococci are intrinsically resistant to cephalosporins β€” never expect them to work.
  • β†’VRE requires alternative agents such as linezolid or daptomycin.
  • β†’Strict contact precautions are needed to prevent VRE transmission in ICU settings.
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Frequently Asked Questions

The group D cell wall antigen is a teichoic acid rather than a protein or polysaccharide, making it a poor immunogen for reliable serological grouping, so phenotypic tests are preferred.

Yes β€” it commonly causes wound, biliary tract and bloodstream infections, and can cause endocarditis in adults and meningitis/bacteraemia in neonates.

Beta-lactams inhibit cell wall synthesis but enterococci have tolerance mechanisms that prevent full bactericidal killing, so combination therapy with an aminoglycoside is often required for cure in serious infections.

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Quick Revision

10-Minute Review
Point 01
Enterococcus = catalase-negative, Gram-positive cocci, normal gut flora.
Point 02
Two key species: E. faecalis (85–90%) and E. faecium (5–10%, more resistant).
Point 03
Grows in 6.5% NaCl broth and hydrolyses bile-aesculin β€” key ID tests.
Point 04
Tolerates 10–45Β°C, wider range than streptococci.
Point 05
PYR and LAP positive in most strains.
Point 06
Intrinsically resistant to cephalosporins, penicillinase-resistant penicillins, monobactams.
Point 07
Vancomycin resistance (VRE) is a major nosocomial threat, more common in E. faecium.
Point 08
Transmitted mainly via contaminated hands of healthcare workers.
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Key Takeaways

πŸŽ“ What You Have Learnt
  • Enterococcus is a leading cause of hospital-acquired infection due to its inherent hardiness and antibiotic resistance.
  • Phenotypic tests (bile-aesculin, salt tolerance, PYR, LAP) are more reliable than serology for identification.
  • Cephalosporins should never be used to treat suspected enterococcal infection due to intrinsic resistance.
  • Vancomycin-resistant Enterococcus (VRE) requires strict infection control measures.
  • Combination therapy is often needed for bactericidal effect in serious enterococcal infections like endocarditis.
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Competency Checklist

Track Your Mastery
β˜‘οΈ Enterococcus β€” Competency
0/8 complete
I understand the principle of this topic
I know the equipment required
I know the reagents and their concentrations
I can perform the procedure step-by-step
I know the normal reference values
I can identify and avoid common errors
I can interpret abnormal results clinically
I passed the quiz with a satisfactory score
I can differentiate Enterococcus from Streptococcus using phenotypic tests
Competency progress
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References

  1. National Institute of Open Schooling. Microbiology β€” Lesson 17: Enterococcus.
  2. Murray PR, Rosenthal KS, Pfaller MA. Medical Microbiology.
  3. Clinical and Laboratory Standards Institute (CLSI) guidelines for antimicrobial susceptibility testing.